findSimilarNodes: Look at all other genes and rank them based on the similarity...

In YY-SONG0718/scfindME: This is a package that adaps "scfind", a search tool for single cell RNA-seq data by gene lists, to alternative splicing analysis

Look at all other genes and rank them based on the similarity of their expression pattern to the pattern defined by the gene query

Description

Look at all other genes and rank them based on the similarity of their expression pattern to the pattern defined by the gene query

Look at all other genes and rank them based on the similarity of their expression pattern to the pattern defined by the gene query

Usage

findSimilarNodes(object, node.list, datasets, top.k = 5)

similar.nodes(object, node.list, datasets, top.k = 5)

## S4 method for signature 'SCFind,character'
findSimilarNodes(object, node.list, datasets, top.k = 5)

Arguments

object	the SCFind object
node.list	genes to be searched in the gene.index
datasets	the datasets that will be considered
top.k	how many genes to retrieve

Value

the list of genes and their similarities presented in Jaccard indices

YY-SONG0718/scfindME documentation built on April 17, 2023, 4:27 a.m.