findTissueSpecificities: Find out how many tissues each gene is found

In YY-SONG0718/scfindME: This is a package that adaps "scfind", a search tool for single cell RNA-seq data by gene lists, to alternative splicing analysis

Find out how many tissues each gene is found

Description

Find out how many tissues each gene is found

Find out how many tissues each gene is found

Usage

findTissueSpecificities(object, gene.list, min.cells = 10)

tissue.specificity(object, gene.list, min.cells = 10)

## S4 method for signature 'SCFind'
findTissueSpecificities(object, gene.list, min.cells = 10)

Arguments

object	the SCFind object
gene.list	genes to be searched in the gene.index
min.cells	threshold of cell hit of a tissue

Value

the list of number of tissue for each gene

YY-SONG0718/scfindME documentation built on April 17, 2023, 4:27 a.m.