bbuchsbaum/neuroim2
Data Structures and IO for Neuroimaging Data with an Emphasis on Functional Magnetic Resonance Imaging (FMRI)

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Functions
554
Source code
52
Man pages
198
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bbuchsbaum/neuroim2: Data Structures and IO for Neuroimaging Data with an Emphasis on Functional Magnetic Resonance Imaging (FMRI)
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API for bbuchsbaum/neuroim2
Data Structures and IO for Neuroimaging Data with an Emphasis on Functional Magnetic Resonance Imaging (FMRI)

Global functions
.checkDimensions Source code
.concat4D Source code
.getDataCode Source code
.getDataSize Source code
.getDataStorage Source code
.getEndian Source code
.getMMapMode Source code
.getRStorage Source code
.gridToIndex Source code
.gridToIndex3D Source code
.indexToGrid Source code
.isExtension Source code
.isSigned Source code
.makeCubicGrid Source code
.makeSquareGrid Source code
.matrixToQuatern Source code
.nearestAnatomy Source code
.niftiExt Source code
.pruneCoords Source code
.quaternToMatrix Source code
.read_meta_info Source code
.read_mmap Source code
.resample Source code
AFNIMetaInfo Man page Source code
AFNIMetaInfo-class Man page
AbstractSparseNeuroVec-class Man page
Arith,DenseNeuroVec,DenseNeuroVec-method Man page
Arith,DenseNeuroVol,DenseNeuroVol-method Man page
Arith,NeuroVec,NeuroVec-method Man page
Arith,NeuroVec,NeuroVol-method Man page
Arith,ROIVol,ROIVol-method Man page
Arith,SparseNeuroVec,SparseNeuroVec-method Man page
Arith,SparseNeuroVol,NeuroVol-method Man page
Arith,SparseNeuroVol,SparseNeuroVol-method Man page
AxisSet-class Man page
AxisSet1D Source code
AxisSet1D-class Man page
AxisSet2D Source code
AxisSet2D-class Man page
AxisSet3D Source code
AxisSet3D-class Man page
AxisSet4D-class Man page
AxisSet5D-class Man page
BigNeuroVec Source code
BigNeuroVec-class Man page
BinaryReader Man page Source code
BinaryReader-class Man page
BinaryWriter Man page Source code
BinaryWriter-class Man page
ClusteredNeuroVol Man page Source code
ClusteredNeuroVol-class Man page
ColumnReader Man page Source code
ColumnReader-class Man page
Compare,SparseNeuroVol,numeric-method Man page
Compare,numeric,SparseNeuroVol-method Man page
DenseNeuroVec Man page Source code
DenseNeuroVec,H5NeuroVec Man page
DenseNeuroVec-class Man page
DenseNeuroVol Man page Source code
DenseNeuroVol,H5NeuroVol Man page
DenseNeuroVol-class Man page
FileBackedNeuroVec Man page Source code
FileBackedNeuroVec-class Man page
FileFormat-class Man page
FileMetaInfo-class Man page
FileSource-class Man page
H5NeuroVec Man page Source code
H5NeuroVec-class Man page
H5NeuroVecSource Source code
H5NeuroVol-class Man page
IndexLookupVol Man page Source code
IndexLookupVol-class Man page
Kernel Man page Source code
Kernel-class Man page
LatentNeuroVec Man page Source code
LatentNeuroVec-class Man page
LatentNeuroVecSource Source code
LogicalNeuroVol Man page Source code
LogicalNeuroVol-class Man page
MappedNeuroVec Man page Source code
MappedNeuroVec-class Man page
MappedNeuroVecSource Man page Source code
MappedNeuroVecSource-class Man page
MetaInfo Man page Source code
MetaInfo-class Man page
NIFTIMetaInfo Man page Source code
NIFTIMetaInfo-class Man page
NamedAxis-class Man page
NeuroBucket-class Man page
NeuroHyperVec-class Man page
NeuroObj-class Man page
NeuroSlice Man page Source code
NeuroSlice-class Man page
NeuroSpace Man page Source code
NeuroSpace-class Man page
NeuroVec Man page Source code
NeuroVec-class Man page
NeuroVecSeq Man page
NeuroVecSeq-class Man page
NeuroVecSource Man page Source code
NeuroVol Man page Source code
NeuroVol-class Man page
NeuroVolSource Man page Source code
ROI-class Man page
ROICoords-class Man page
ROIVec Man page Source code
ROIVec-class Man page
ROIVecWindow-class Man page
ROIVol Man page Source code
ROIVol-class Man page
ROIVolWindow-class Man page
SparseNeuroVec Man page Source code
SparseNeuroVec-class Man page
SparseNeuroVecSource Source code
SparseNeuroVecSource-class Man page
SparseNeuroVol Man page Source code
SparseNeuroVol,array Man page
SparseNeuroVol,numeric Man page
SparseNeuroVol-class Man page
Summary,SparseNeuroVec-method Man page
Summary,SparseNeuroVol-method Man page
[,AbstractSparseNeuroVec,numeric,numeric,ANY-method Man page
[,ArrayLike3D,matrix,missing,ANY-method Man page
[,ArrayLike3D,missing,missing,ANY-method Man page
[,ArrayLike3D,missing,numeric,ANY-method Man page
[,ArrayLike3D,numeric,missing,ANY-method Man page
[,ArrayLike4D,matrix,missing,ANY-method Man page
[,ArrayLike4D,missing,missing,ANY-method Man page
[,ArrayLike4D,missing,numeric,ANY-method Man page
[,ArrayLike4D,numeric,missing,ANY-method Man page
[,ArrayLike4D,numeric,numeric,ANY-method Man page
[,NeuroVol,ROICoords,missing,ANY-method Man page
[,ROIVol,logical,missing,ANY-method Man page
[,ROIVol,numeric,missing,ANY-method Man page
[,SparseNeuroVol,numeric,numeric,ANY-method Man page
[[,LatentNeuroVec,numeric-method Man page
[[,NeuroVec,numeric-method Man page
[[,NeuroVecSeq,numeric-method Man page
[[,SparseNeuroVec,numeric-method Man page
add_dim Man page
add_dim,NeuroSpace,numeric-method Man page
as Man page
as,DenseNeuroVol,array Man page
as.dense Man page
as.dense,ClusteredNeuroVol-method Man page
as.dense,ROIVol-method Man page
as.list,FileBackedNeuroVec-method Man page
as.list,NeuroVec-method Man page
as.list,SparseNeuroVec-method Man page
as.logical,NeuroVol-method Man page
as.mask Man page
as.mask,NeuroVol,missing-method Man page
as.mask,NeuroVol,numeric-method Man page
as.matrix,FileBackedNeuroVec-method Man page
as.matrix,NeuroVec-method Man page
as.matrix,ROIVec-method Man page
as.matrix,SparseNeuroVec-method Man page
as.numeric,SparseNeuroVol-method Man page
as.sparse Man page
as.sparse,DenseNeuroVec,LogicalNeuroVol-method Man page
as.sparse,DenseNeuroVec,numeric-method Man page
as.sparse,DenseNeuroVol,LogicalNeuroVol-method Man page
as.sparse,DenseNeuroVol,numeric-method Man page
as_nifti_header Source code
axes Man page
axes,NeuroSpace-method Man page
bilateral_filter Man page Source code
bilateral_filter_4d_cpp Source code
bilateral_filter_cpp Source code
bilateral_filter_vec Source code
bootstrap_searchlight Man page Source code
bounds Man page
bounds,NeuroSpace-method Man page
box_blur Source code
box_nbhd Source code
centroid Man page
centroid,NeuroSpace-method Man page
centroid,ROICoords-method Man page
centroids Man page
centroids,ClusteredNeuroVol-method Man page
checkDim Source code
close,BinaryReader-method Man page
close,BinaryWriter-method Man page
clustered_searchlight Man page Source code
concat Man page
concat,AbstractSparseNeuroVec,missing-method Man page
concat,DenseNeuroVol,DenseNeuroVol-method Man page
concat,DenseNeuroVol,missing-method Man page
concat,LatentNeuroVec,LatentNeuroVec-method Man page
concat,NeuroVec,NeuroVec-method Man page
concat,NeuroVec,NeuroVol-method Man page
concat,NeuroVol,NeuroVec-method Man page
concat,ROIVec,ROIVec-method Man page
concat,SparseNeuroVec,SparseNeuroVec-method Man page
conn_comp Man page
conn_comp,NeuroVol-method Man page
conn_comp_3D Man page Source code
convert_hd Source code
coord_to_grid Man page
coord_to_grid,NeuroSpace,matrix-method Man page
coord_to_grid,NeuroSpace,numeric-method Man page
coord_to_grid,NeuroVol,matrix-method Man page
coord_to_grid,NeuroVol,numeric-method Man page
coord_to_index Man page
coord_to_index,NeuroSpace,matrix-method Man page
coord_to_index,NeuroSpace,numeric-method Man page
coord_to_index,NeuroVol,matrix-method Man page
coords Man page
coords,AbstractSparseNeuroVec-method Man page
coords,IndexLookupVol-method Man page
coords,ROICoords-method Man page
createNIfTIHeader Source code
cuboid_roi Man page Source code
data_file Man page
data_file,FileFormat,character-method Man page
data_file_matches Man page
data_file_matches,FileFormat,character-method Man page
data_reader Man page
data_reader,AFNIMetaInfo-method Man page
data_reader,NIFTIMetaInfo-method Man page
dim,FileMetaInfo-method Man page
dim,NeuroObj-method Man page
dim,NeuroSpace-method Man page
dim_of Man page
dim_of,NeuroSpace,NamedAxis-method Man page
drop,NeuroVec-method Man page
drop_dim Man page
drop_dim,AxisSet2D,missing-method Man page
drop_dim,AxisSet2D,numeric-method Man page
drop_dim,AxisSet3D,missing-method Man page
drop_dim,AxisSet3D,numeric-method Man page
drop_dim,NeuroSpace,missing-method Man page
drop_dim,NeuroSpace,numeric-method Man page
embed_kernel Man page
embed_kernel,Kernel,NeuroSpace,numeric-method Man page
exgridToIndex3DCpp Source code
exgridToIndex4DCpp Source code
extractor3d Man page
extractor4d Man page
fast.expand.grid Source code
file_matches Man page
file_matches,FileFormat,character-method Man page
findAnatomy3D Source code
find_descriptor Source code
find_seqnum Source code
gaussian_blur Man page Source code
gaussian_blur_cpp Source code
gaussian_weights Source code
gridToIndex3DCpp Source code
gridToIndexCpp Source code
gridToIndexSingleCpp Source code
grid_to_coord Man page
grid_to_coord,NeuroSpace,matrix-method Man page
grid_to_coord,NeuroSpace,numeric-method Man page
grid_to_coord,NeuroVol,matrix-method Man page
grid_to_grid Man page
grid_to_grid,NeuroSpace,matrix-method Man page
grid_to_grid,matrix,matrix-method Man page
grid_to_index Man page
grid_to_index,NeuroSlice,matrix-method Man page
grid_to_index,NeuroSlice,numeric-method Man page
grid_to_index,NeuroSpace,matrix-method Man page
grid_to_index,NeuroSpace,numeric-method Man page
grid_to_index,NeuroVol,matrix-method Man page
grid_to_index,NeuroVol,numeric-method Man page
grid_to_intvec Source code
guided_filter Man page Source code
header_file Man page
header_file,FileFormat,character-method Man page
header_file_matches Man page
header_file_matches,FileFormat,character-method Man page
indexToGridCpp Source code
index_to_coord Man page
index_to_coord,NeuroSpace,integer-method Man page
index_to_coord,NeuroSpace,numeric-method Man page
index_to_coord,NeuroVec,integer-method Man page
index_to_coord,NeuroVol,integer-method Man page
index_to_grid Man page
index_to_grid,NeuroSlice,numeric-method Man page
index_to_grid,NeuroSpace,numeric-method Man page
index_to_grid,NeuroVec,index-method Man page
index_to_grid,NeuroVec,integer-method Man page
index_to_grid,NeuroVol,index-method Man page
index_to_grid,NeuroVol,integer-method Man page
indices Man page
indices,AbstractSparseNeuroVec-method Man page
indices,IndexLookupVol-method Man page
indices,ROIVec-method Man page
indices,ROIVol-method Man page
inverse_trans Man page
inverse_trans,NeuroSpace-method Man page
kernel_filt_3d_cpp Source code
length,NeuroVec-method Man page
length,NeuroVecSeq-method Man page
length,ROIVol-method Man page
local_sphere Source code
lookup Man page
lookup,AbstractSparseNeuroVec,numeric-method Man page
lookup,IndexLookupVol,numeric-method Man page
make_spherical_grid Source code
map_values Man page
map_values,NeuroVol,list-method Man page
map_values,NeuroVol,matrix-method Man page
mapf Man page
mapf,NeuroVol,Kernel-method Man page
matchAnatomy2D Source code
matchAnatomy3D Source code
matchAxis Source code
ndim Man page
ndim,AxisSet-method Man page
ndim,NeuroObj-method Man page
ndim,NeuroSpace-method Man page
neuroim2 Man page
neuroim2-package Man page
niftiDim Source code
num_clusters Man page
num_clusters,ClusteredNeuroVol-method Man page
origin Man page
origin,NeuroSpace-method Man page
origin,NeuroVol-method Man page
parseElement Source code
parseFloatAttribute Source code
parseIntAttribute Source code
parseStringAttribute Source code
parse_niml_element Source code
parse_niml_file Source code
parse_niml_header Source code
parse_niml_next Source code
partition Man page
partition,DenseNeuroVol,numeric-method Man page
partition,LogicalNeuroVol,integer-method Man page
partition,LogicalNeuroVol,numeric-method Man page
patch_set Man page
patch_set,NeuroVol,numeric,LogicalNeuroVol-method Man page
patch_set,NeuroVol,numeric,missing-method Man page
perm_mat Man page
perm_mat,AxisSet2D-method Man page
perm_mat,AxisSet3D-method Man page
perm_mat,NeuroSpace-method Man page
plot,NeuroSlice-method Man page
plot,NeuroVol-method Man page
prep_sparsenvec Source code
random_searchlight Man page Source code
read_afni_header Source code
read_columns Man page
read_columns,ColumnReader,integer-method Man page
read_elements Man page
read_elements,BinaryReader,numeric-method Man page
read_header Man page Source code
read_mapped_data Source code
read_mapped_series Source code
read_mapped_vols Source code
read_meta_info Man page
read_meta_info,AFNIFormat-method Man page
read_meta_info,NIFTIFormat-method Man page
read_nifti_header Source code
read_niml_data Source code
read_vec Man page Source code
read_vol Man page Source code
read_vol_list Man page Source code
render Man page
render_slice Man page
reorient Man page
reorient,NeuroSpace,character-method Man page
resample Man page
resample,NeuroVol,NeuroSpace-method Man page
resample,NeuroVol,NeuroVol-method Man page
roi_surface_matrix Source code
roi_vector_matrix Source code
scale_series Man page
scale_series,NeuroVec,logical,logical-method Man page
scale_series,NeuroVec,logical,missing-method Man page
scale_series,NeuroVec,missing,logical-method Man page
scale_series,NeuroVec,missing,missing-method Man page
searchlight Man page Source code
searchlight_coords Man page Source code
series Man page
series,AbstractSparseNeuroVec,ROICoords-method Man page
series,AbstractSparseNeuroVec,integer-method Man page
series,AbstractSparseNeuroVec,matrix-method Man page
series,AbstractSparseNeuroVec,numeric-method Man page
series,DenseNeuroVec,integer-method Man page
series,H5NeuroVec,integer-method Man page
series,H5NeuroVec,matrix-method Man page
series,H5NeuroVec,numeric-method Man page
series,NeuroVec,LogicalNeuroVol-method Man page
series,NeuroVec,NeuroVol-method Man page
series,NeuroVec,ROICoords-method Man page
series,NeuroVec,integer-method Man page
series,NeuroVec,matrix-method Man page
series,NeuroVec,numeric-method Man page
series_reader Source code
series_roi Man page
series_roi,NeuroVec,LogicalNeuroVol-method Man page
series_roi,NeuroVec,ROICoords-method Man page
series_roi,NeuroVec,matrix-method Man page
series_roi,NeuroVec,numeric-method Man page
show,AxisSet1D-method Man page
show,AxisSet2D-method Man page
show,AxisSet3D-method Man page
show,AxisSet4D-method Man page
show,ClusteredNeuroVol-method Man page
show,FileMetaInfo-method Man page
show,NamedAxis-method Man page
show,NeuroSlice-method Man page
show,NeuroSpace-method Man page
show,NeuroVec-method Man page
show,NeuroVecSource-method Man page
show,NeuroVol-method Man page
show,ROIVec-method Man page
show,ROIVol-method Man page
show,SparseNeuroVec-method Man page
show,SparseNeuroVol-method Man page
slice Man page
slice,NeuroVol,numeric,NeuroSpace,AxisSet3D-method Man page
slice,NeuroVol,numeric,numeric,missing-method Man page
slices Man page
slices,NeuroVol-method Man page
space Man page
space,IndexLookupVol-method Man page
space,NeuroObj-method Man page
space,NeuroSpace-method Man page
space,ROICoords-method Man page
spacing Man page
spacing,NeuroObj-method Man page
spacing,NeuroSpace-method Man page
spacing,ROICoords-method Man page
spherical_roi Man page
split_blocks Man page Source code
split_blocks,NeuroVec,factor-method Man page
split_blocks,NeuroVec,integer-method Man page
split_clusters Man page
split_clusters,ClusteredNeuroVol,missing-method Man page
split_clusters,NeuroVec,ClusteredNeuroVol-method Man page
split_clusters,NeuroVec,integer-method Man page
split_clusters,NeuroVec,numeric-method Man page
split_clusters,NeuroVol,ClusteredNeuroVol-method Man page
split_clusters,NeuroVol,integer-method Man page
split_clusters,NeuroVol,numeric-method Man page
split_fill Man page
split_fill,NeuroVol,factor,function-method Man page
split_reduce Man page
split_reduce,NeuroVec,factor,function-method Man page
split_reduce,NeuroVec,factor,missing-method Man page
split_reduce,matrix,factor,function-method Man page
split_reduce,matrix,factor,missing-method Man page
split_reduce,matrix,integer,function-method Man page
split_reduce,matrix,integer,missing-method Man page
split_scale Man page
split_scale,DenseNeuroVec,factor,logical,logical-method Man page
split_scale,DenseNeuroVec,factor,logical,missing-method Man page
split_scale,DenseNeuroVec,factor,missing,missing-method Man page
split_scale,matrix,factor,logical,logical-method Man page
split_scale,matrix,factor,missing,missing-method Man page
square_roi Man page Source code
strip_extension Man page
strip_extension,FileFormat,character-method Man page
sub_vector Man page
sub_vector,FileBackedNeuroVec,numeric-method Man page
sub_vector,NeuroVec,numeric-method Man page
sub_vector,NeuroVecSeq,numeric-method Man page
sub_vector,SparseNeuroVec,numeric-method Man page
to_h5_latentvec Source code
to_nih5_vec Source code
to_nih5_vol Source code
trans Man page
trans,MetaInfo-method Man page
trans,NIFTIMetaInfo-method Man page
trans,NeuroObj-method Man page
trans,NeuroSpace-method Man page
values Man page
values,ROIVec-method Man page
values,ROIVol-method Man page
vectors Man page
vectors,DenseNeuroVec,missing-method Man page
vectors,NeuroVec,logical-method Man page
vectors,NeuroVec,missing-method Man page
vectors,NeuroVec,numeric-method Man page
vectors,ROIVec,integer-method Man page
vectors,ROIVec,logical-method Man page
vectors,ROIVec,missing-method Man page
vectors,ROIVec,numeric-method Man page
vectors,SparseNeuroVec,missing-method Man page
vectors,matrix,integer-method Man page
vectors,matrix,missing-method Man page
vectors,matrix,numeric-method Man page
vols Man page
vols,NeuroVec,missing-method Man page
vols,NeuroVec,numeric-method Man page
voxels Man page
voxels,Kernel-method Man page
which_dim Man page
which_dim,NeuroSpace,NamedAxis-method Man page
write_elements Man page
write_elements,BinaryWriter,numeric-method Man page
write_nifti_header Source code
write_nifti_vector Source code
write_nifti_volume Source code
write_vec Man page
write_vec,LatentNeuroVec,character,missing,missing-method Man page
write_vec,NeuroVec,character,character,missing-method Man page
write_vec,NeuroVec,character,missing,character,ANY-method Man page
write_vec,NeuroVec,character,missing,character-method Man page
write_vec,NeuroVec,character,missing,missing-method Man page
write_vec,ROIVec,character,missing,missing-method Man page
write_vol Man page
write_vol,ClusteredNeuroVol,character,missing,missing-method Man page
write_vol,NeuroVol,character,character,missing-method Man page
write_vol,NeuroVol,character,missing,character-method Man page
write_vol,NeuroVol,character,missing,missing-method Man page
write_vol,ROIVol,character,character,missing-method Man page
bbuchsbaum/neuroim2 documentation built on April 20, 2024, 4:20 p.m.

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