add_metadata_to_metabolite_summary: Do basic enrichment testing of between-group metabolite...
In borenstein-lab/mimosa2: Model-based Integration of Metabolite Observations and Species Abundances
View source: R/postProcessing.R
add_metadata_to_metabolite_summary R Documentation
Do basic enrichment testing of between-group metabolite differences and add results to the MIMOSA summary table
Description
Do basic enrichment testing of between-group metabolite differences and add results to the MIMOSA summary table
Usage
add_metadata_to_metabolite_summary(node_data, mets, metadata, metadata_var)
Arguments
node_data
Table from "_nodes.txt" file produced by runMimosa.R
mets
Table of metabolite abundance data
metadata
Table of samples and their grouping by a binary variable
metadata_var
Column name in metadata table for the binary grouping variable to be used for testing
Value
Processed table including columns describing binary enrichment status and difference in mean
add_metadata_to_metabolite_summary(node_data, mets, metadata, "DiseaseStatus")
borenstein-lab/mimosa2 documentation built on Dec. 19, 2024, 12:44 a.m.
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View source: R/postProcessing.R
| add_metadata_to_metabolite_summary | R Documentation |
Do basic enrichment testing of between-group metabolite differences and add results to the MIMOSA summary table
Description
Do basic enrichment testing of between-group metabolite differences and add results to the MIMOSA summary table
Usage
add_metadata_to_metabolite_summary(node_data, mets, metadata, metadata_var)
Arguments
node_data |
Table from "_nodes.txt" file produced by runMimosa.R |
mets |
Table of metabolite abundance data |
metadata |
Table of samples and their grouping by a binary variable |
metadata_var |
Column name in metadata table for the binary grouping variable to be used for testing |
Value
Processed table including columns describing binary enrichment status and difference in mean add_metadata_to_metabolite_summary(node_data, mets, metadata, "DiseaseStatus")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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