get_kegg_network: Imports pre-generated KEGG network models for each species

In borenstein-lab/mimosa2: Model-based Integration of Metabolite Observations and Species Abundances

Imports pre-generated KEGG network models for each species

Description

Imports pre-generated KEGG network models for each species

Usage

get_kegg_network(
  species_list,
  net_path = "data/picrustGenomeData/indivModels/",
  net_suffix = "_rxns.txt"
)

Arguments

species_list	list of OTUs (typically Greengenes)
net_path	Path to metabolic network models for each species
net_suffix	File suffix for species-level network models

Value

Table of KEGG reactions for each species

Examples

get_kegg_network(species_table)

borenstein-lab/mimosa2 documentation built on Dec. 19, 2024, 12:44 a.m.