filter_currency_metabolites: Remove metabolites linked to many reactions from a metabolic...
In borenstein-lab/mimosa2: Model-based Integration of Metabolite Observations and Species Abundances
View source: R/core_functions.R
filter_currency_metabolites R Documentation
Remove metabolites linked to many reactions from a metabolic network.
Description
Remove metabolites linked to many reactions from a metabolic network.
Usage
filter_currency_metabolites(rxn_table, degree_filter = 30)
Arguments
rxn_table
Network table of reactions
degree_filter
Compounds involved in more than this number of reactions will be removed
Value
Network table without compounds found in reactions greater than the cutoff
Examples
filter_currency_metabolites(rxn_table, degree_filter = 50)
borenstein-lab/mimosa2 documentation built on Dec. 19, 2024, 12:44 a.m.
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View source: R/core_functions.R
| filter_currency_metabolites | R Documentation |
Remove metabolites linked to many reactions from a metabolic network.
Description
Remove metabolites linked to many reactions from a metabolic network.
Usage
filter_currency_metabolites(rxn_table, degree_filter = 30)
Arguments
rxn_table |
Network table of reactions |
degree_filter |
Compounds involved in more than this number of reactions will be removed |
Value
Network table without compounds found in reactions greater than the cutoff
Examples
filter_currency_metabolites(rxn_table, degree_filter = 50)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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