get_cmp_scores: Calculate CMP scores based on community network and gene...
In borenstein-lab/mimosa2: Model-based Integration of Metabolite Observations and Species Abundances
View source: R/core_functions.R
get_cmp_scores R Documentation
Calculate CMP scores based on community network and gene abundances
Description
Calculate CMP scores based on community network and gene abundances
Usage
get_cmp_scores(emm, norm_kos)
Arguments
emm
Stoichiometric network matrix produced by generate_genomic_network
norm_kos
Data.table of gene abundances
Value
Data.table of CMP scores
Examples
get_cmp_scores(ko_net[[1]], gene_abunds)
borenstein-lab/mimosa2 documentation built on Dec. 19, 2024, 12:44 a.m.
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View source: R/core_functions.R
| get_cmp_scores | R Documentation |
Calculate CMP scores based on community network and gene abundances
Description
Calculate CMP scores based on community network and gene abundances
Usage
get_cmp_scores(emm, norm_kos)
Arguments
emm |
Stoichiometric network matrix produced by generate_genomic_network |
norm_kos |
Data.table of gene abundances |
Value
Data.table of CMP scores
Examples
get_cmp_scores(ko_net[[1]], gene_abunds)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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