build_metabolic_model: Build species-specific metabolic model for MIMOSA2 analysis

In borenstein-lab/mimosa2: Model-based Integration of Metabolite Observations and Species Abundances

Build species-specific metabolic model for MIMOSA2 analysis

Description

Build species-specific metabolic model for MIMOSA2 analysis

Usage

build_metabolic_model(
  species,
  config_table,
  netAdd = NULL,
  manual_agora = F,
  degree_filt = 0
)

Arguments

species	Table of species/taxon abundances
config_table	Data.table of input files and settings for MIMOSA
netAdd	Table of netowrk information to add to the model
manual_agora	Option to provide AGORA species directly (for simulation data)
degree_filt	Filter currency metabolites linked to more reactions than this value

Value

Data.table of network model of genes and reactions for each species/taxon

Examples

build_metabolic_model(config_table)

borenstein-lab/mimosa2 documentation built on Dec. 19, 2024, 12:44 a.m.