emm_to_edge_list: Convert stoichiometric matrix to edge list of reactions
In borenstein-lab/mimosa2: Model-based Integration of Metabolite Observations and Species Abundances
View source: R/speciesPicrustFunctions.R
emm_to_edge_list R Documentation
Convert stoichiometric matrix to edge list of reactions
Description
Convert stoichiometric matrix to edge list of reactions
Usage
emm_to_edge_list(emm)
Arguments
emm
Stoichiometric matrix (rows are metabolites, columns are reactions)
Value
A data.table where each row is a pair of compounds being exchanged in a reaction
Examples
emm_to_edge_list(s_mat)
borenstein-lab/mimosa2 documentation built on Dec. 19, 2024, 12:44 a.m.
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View source: R/speciesPicrustFunctions.R
| emm_to_edge_list | R Documentation |
Convert stoichiometric matrix to edge list of reactions
Description
Convert stoichiometric matrix to edge list of reactions
Usage
emm_to_edge_list(emm)
Arguments
emm |
Stoichiometric matrix (rows are metabolites, columns are reactions) |
Value
A data.table where each row is a pair of compounds being exchanged in a reaction
Examples
emm_to_edge_list(s_mat)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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