contribs_by_species_list: Get a list of relevant gene abundances for each species and...
In borenstein-lab/mimosa2: Model-based Integration of Metabolite Observations and Species Abundances
View source: R/singleSpec_contributions.R
contribs_by_species_list R Documentation
Get a list of relevant gene abundances for each species and each metabolite, optionally save
Description
Get a list of relevant gene abundances for each species and each metabolite, optionally save
Usage
contribs_by_species_list(contribs, valueVar, out_prefix, write_out = T)
Arguments
contribs
data.table of OTU, genes, samples and abundances
valueVar
"relAbundSample" or "singleMusicc", abundance metric to use for single taxon gene abundances
out_prefix
directory to write to
Value
list of relevant gene abundances for each species and each metabolite
borenstein-lab/mimosa2 documentation built on Dec. 19, 2024, 12:44 a.m.
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View source: R/singleSpec_contributions.R
| contribs_by_species_list | R Documentation |
Get a list of relevant gene abundances for each species and each metabolite, optionally save
Description
Get a list of relevant gene abundances for each species and each metabolite, optionally save
Usage
contribs_by_species_list(contribs, valueVar, out_prefix, write_out = T)
Arguments
contribs |
data.table of OTU, genes, samples and abundances |
valueVar |
"relAbundSample" or "singleMusicc", abundance metric to use for single taxon gene abundances |
out_prefix |
directory to write to |
Value
list of relevant gene abundances for each species and each metabolite
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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