get_all_consistent_metabolite_info: Read output of runMimosa.R from files to make a table of all...
In borenstein-lab/mimosa2: Model-based Integration of Metabolite Observations and Species Abundances
View source: R/postProcessing.R
get_all_consistent_metabolite_info R Documentation
Read output of runMimosa.R from files to make a table of all relevant MIMOSA results for metabolites identified as consistent
Description
Read output of runMimosa.R from files to make a table of all relevant MIMOSA results for metabolites identified as consistent
Usage
get_all_consistent_metabolite_info(prefix, contribs_file)
Arguments
prefix
Naming prefix used by runMimosa.R
contribs_file
File of species-specific gene abundances used for calculating species contributions
Value
A table where every row represents genes and species that were identified as potential important contributors for a consistent metabolite
get_all_consistent_metabolite_info("run1", "filePath/otu_gene_contributions.txt")
borenstein-lab/mimosa2 documentation built on Dec. 19, 2024, 12:44 a.m.
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View source: R/postProcessing.R
| get_all_consistent_metabolite_info | R Documentation |
Read output of runMimosa.R from files to make a table of all relevant MIMOSA results for metabolites identified as consistent
Description
Read output of runMimosa.R from files to make a table of all relevant MIMOSA results for metabolites identified as consistent
Usage
get_all_consistent_metabolite_info(prefix, contribs_file)
Arguments
prefix |
Naming prefix used by runMimosa.R |
contribs_file |
File of species-specific gene abundances used for calculating species contributions |
Value
A table where every row represents genes and species that were identified as potential important contributors for a consistent metabolite get_all_consistent_metabolite_info("run1", "filePath/otu_gene_contributions.txt")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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