build_generic_network: Function called by run_pipeline to get species-specific...
In borenstein-lab/mimosa2: Model-based Integration of Metabolite Observations and Species Abundances

build_generic_network

R Documentation

Function called by run_pipeline to get species-specific reaction network

Function called by run_pipeline to get species-specific reaction network

build_generic_network(contribution_table, kegg_paths)

`contribution_table`	OTU/seq table
`kegg_paths`	paths to KEGG network files

Table of species-specific KEGG reactions

build_generic_network(species_table, "Greengenes 13_5 or 13_8", picrust_paths, kegg_paths)

borenstein-lab/mimosa2 documentation built on Dec. 19, 2024, 12:44 a.m.

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