basic_correlation_matrix: Basic species-metaoblite correlation for comparison
In borenstein-lab/mimosa2: Model-based Integration of Metabolite Observations and Species Abundances
View source: R/misc_helper_functions.R
basic_correlation_matrix R Documentation
Basic species-metaoblite correlation for comparison
Description
Basic species-metaoblite correlation for comparison
Usage
basic_correlation_matrix(species, mets, method = "pearson")
Arguments
species
long-form table of species abundances
mets
long-form table of metabolite concentrations
method
Correlation method, must be one recognized by cor.test
Value
Table of correlation coefficients and p-values for every species-metabolite pair with sufficient complete sample data
Examples
basic_correlation_matrix(species, mets)
borenstein-lab/mimosa2 documentation built on Dec. 19, 2024, 12:44 a.m.
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View source: R/misc_helper_functions.R
| basic_correlation_matrix | R Documentation |
Basic species-metaoblite correlation for comparison
Description
Basic species-metaoblite correlation for comparison
Usage
basic_correlation_matrix(species, mets, method = "pearson")
Arguments
species |
long-form table of species abundances |
mets |
long-form table of metabolite concentrations |
method |
Correlation method, must be one recognized by cor.test |
Value
Table of correlation coefficients and p-values for every species-metabolite pair with sufficient complete sample data
Examples
basic_correlation_matrix(species, mets)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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