compare_met: Compare a single set each of CMP scores and metabolite...

In borenstein-lab/mimosa2: Model-based Integration of Metabolite Observations and Species Abundances

Compare a single set each of CMP scores and metabolite concentrations

Description

Compare a single set each of CMP scores and metabolite concentrations

Usage

compare_met(
  met_met,
  met_cmp,
  met_all,
  cmp_all,
  posneg = "pos",
  cor_method = "spearman",
  nperm = 15000
)

Arguments

met_met	metabolite to use from metabolite concentration data
met_cmp	metabolite to use from CMP score data
met_all	matrix of metabolite concentrations
cmp_all	matrix of CMP scores
posneg	Whether to test for positive or negative concentration
cor_method	spearman or pearson
nperm	number of permutations for Mantel test

Value

p-value from Mantel test

Examples

compare_met("C00001", "C00002", mets, cmp_mat, "pos")

borenstein-lab/mimosa2 documentation built on Dec. 19, 2024, 12:44 a.m.