In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

Giotto provides a lot of analyses, visualizations and other options to facilitate your spatial dataset analysis. We are working on providing easy-to-understand examples or tutorials, but if anything is not clear or if there is something you would like to see in particular, then do not hesitate to contact us.

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Installation

You can install Giotto Suite on any platform in 2 easy steps:

Step 1: install Giotto Suite

library(remotes)
remotes::install_github("RubD/Giotto@suite") 

Step 2: install the Giotto python environment

The python environment only needs to be installed once.

library(Giotto)
installGiottoEnvironment()

This command only needs to be run once and then Giotto will automatically detect the environment in the future.

For more information:

• See Installation for alternative (manual) installation options.
• See Giotto Environment to learn more about the Giotto environment.
• See FAQ for troubleshooting.

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Getting started

[under construction]

Tutorials for Giotto specific tasks and functionalities.

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Analyses

Tutorials for Spatial analyses that can be performed with Giotto Suite.
Full dataset examples can be found in the Datasets tab.

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drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.