cal_expr_residual: cal_expr_residual

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

cal_expr_residual

Description

Calculate feature expression residual (observed_exp - DWLS_predicted)

Usage

cal_expr_residual(
  gobject,
  spat_unit = NULL,
  feat_type = NULL,
  expression_values = c("normalized", "scaled", "custom"),
  ave_celltype_exp
)

Arguments

gobject	giotto object
spat_unit	spatial unit (e.g. 'cell')
feat_type	feature type (e.g. 'rna')
expression_values	expression values to use (e.g. 'normalized', 'scaled', 'custom')
ave_celltype_exp	average expression matrix in cell types

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.