calculateMetaTable: calculateMetaTable

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

calculateMetaTable

Description

calculates the average gene expression for one or more (combined) annotation columns.

Usage

calculateMetaTable(
  gobject,
  spat_unit = NULL,
  feat_type = NULL,
  expression_values = c("normalized", "scaled", "custom"),
  metadata_cols = NULL,
  selected_feats = NULL,
  selected_genes = NULL
)

Arguments

gobject	giotto object
spat_unit	spatial unit
feat_type	feature type
expression_values	expression values to use
metadata_cols	annotation columns found in pDataDT(gobject)
selected_feats	subset of features to use
selected_genes	subset of genes to use (deprecated)

Value

data.table with average expression values for each gene per (combined) annotation

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.