calculateMetaTableCells: calculateMetaTableCells

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

calculateMetaTableCells

Description

calculates the average metadata values for one or more (combined) annotation columns.

Usage

calculateMetaTableCells(
  gobject,
  spat_unit = NULL,
  feat_type = NULL,
  value_cols = NULL,
  metadata_cols = NULL,
  spat_enr_names = NULL
)

Arguments

gobject	giotto object
spat_unit	spatial unit
feat_type	feature type
value_cols	metadata or enrichment value columns to use
metadata_cols	annotation columns found in pDataDT(gobject)
spat_enr_names	which spatial enrichment results to include

Value

data.table with average metadata values per (combined) annotation

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.