calculateOverlapRaster: calculateOverlapRaster
In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

calculateOverlapRaster

R Documentation

calculateOverlapRaster

Description

calculate overlap between cellular structures (polygons) and features (points)

Usage

calculateOverlapRaster(
  gobject,
  name_overlap = NULL,
  spatial_info = NULL,
  poly_ID_names = NULL,
  feat_info = NULL,
  feat_subset_column = NULL,
  feat_subset_ids = NULL,
  count_info_column = NULL,
  return_gobject = TRUE,
  verbose = TRUE
)

Arguments

`gobject`	giotto object
`name_overlap`	name for the overlap results (default to feat_info parameter)
`spatial_info`	polygon information
`poly_ID_names`	(optional) list of poly_IDs to use
`feat_info`	feature information
`feat_subset_column`	feature info column to subset features with
`feat_subset_ids`	ids within feature info column to use for subsetting
`count_info_column`	column with count information (optional)
`return_gobject`	return giotto object (default: TRUE)
`verbose`	be verbose