cellProximityEnrichmentEachSpot: cellProximityEnrichmentEachSpot

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

cellProximityEnrichmentEachSpot

Description

Compute cell-cell interaction enrichment for each spot with its interacted spots (observed)

Usage

cellProximityEnrichmentEachSpot(
  gobject,
  spat_unit = NULL,
  feat_type = NULL,
  spatial_network_name = "spatial_network",
  cluster_column = "cell_ID"
)

Arguments

gobject	giotto object
spat_unit	spatial unit (e.g. 'cell')
feat_type	feature type (e.g. 'rna')
spatial_network_name	name of spatial network to use
cluster_column	name of column to use for clusters

Value

matrix that rownames are cell-cell interaction pairs and colnames are cell_IDs

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.