combineICG: combineICG

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

combineICG

Description

Combine ICF scores in a pairwise manner.

Usage

combineICG(...)

Arguments

...

Arguments passed on to combineICF icfObject ICF (interaction changed feat) score object selected_ints subset of selected cell-cell interactions (optional) selected_feats subset of selected Feats (optional) specific_feats_1 specific Featset combo (need to position match specific_genes_2) specific_feats_2 specific Featset combo (need to position match specific_genes_1) min_cells minimum number of target cell type min_int_cells minimum number of interacting cell type min_fdr minimum adjusted p-value min_spat_diff minimum absolute spatial expression difference min_log2_fc minimum absolute log2 fold-change do_parallel run calculations in parallel with mclapply verbose verbose

See Also

combineICF

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.