combineInteractionChangedFeats | R Documentation |
Combine ICF scores in a pairwise manner.
combineInteractionChangedFeats(
icfObject,
selected_ints = NULL,
selected_feats = NULL,
specific_feats_1 = NULL,
specific_feats_2 = NULL,
min_cells = 5,
min_int_cells = 3,
min_fdr = 0.05,
min_spat_diff = 0,
min_log2_fc = 0.5,
do_parallel = TRUE,
verbose = T
)
icfObject |
ICF (interaction changed feat) score object |
selected_ints |
subset of selected cell-cell interactions (optional) |
selected_feats |
subset of selected Features (optional) |
specific_feats_1 |
specific Featureset combo (need to position match specific_feats_2) |
specific_feats_2 |
specific Featureset combo (need to position match specific_feats_1) |
min_cells |
minimum number of target cell type |
min_int_cells |
minimum number of interacting cell type |
min_fdr |
minimum adjusted p-value |
min_spat_diff |
minimum absolute spatial expression difference |
min_log2_fc |
minimum absolute log2 fold-change |
do_parallel |
run calculations in parallel with mclapply |
verbose |
verbose |
combIcfObject that contains the filtered differential feature scores
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