combineSpatialCellFeatureInfo: combineSpatialCellFeatureInfo

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

combineSpatialCellFeatureInfo

Description

Combine spatial cell information (e.g. polygon) and spatial feature information (e.g. transcript locations)

Usage

combineSpatialCellFeatureInfo(
  gobject,
  spat_unit = NULL,
  feat_type = NULL,
  selected_features = NULL
)

Arguments

gobject	Giotto object
spat_unit	spatial unit
feat_type	feature type(s)
selected_features	select set of features

Details

The returned data.table has the following columns:

• sdimx: spatial feature location on the x-axis

• sdimy: spatial feature location on the y-axis

• feat_ID: unique feature ID

• cell_ID: unique cell ID

• used: how often was the feature used/assigned to a cell

• feat: selected feature(s)

Value

list of data.table(s)

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.