compareCellAbundance: Compare cell types percent per polygon

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

Compare cell types percent per polygon

Description

Compare cell types percent per polygon

Usage

compareCellAbundance(
  gobject,
  polygon_name = "selections",
  spat_unit = "cell",
  feat_type = "rna",
  cell_type_column = "leiden_clus",
  ...
)

Arguments

gobject	A Giotto object
polygon_name	name of polygon selections
spat_unit	spatial unit. Default = "cell"
feat_type	feature type. Default = "rna"
cell_type_column	column name within the cell metadata table to use
...	Additional parameters passed to ComplexHeatmap::Heatmap

Value

A ComplexHeatmap::Heatmap

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.