createDimObj: Create S4 dimObj

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

Create S4 dimObj

Description

Create an S4 dimObj

Usage

createDimObj(
  coordinates,
  name = "test",
  spat_unit = "cell",
  feat_type = "rna",
  method = NULL,
  reduction = "cells",
  provenance = NULL,
  misc = NULL,
  my_rownames = NULL
)

Arguments

coordinates	embedding coordinates
name	name of dimObj
spat_unit	spatial unit of aggregated expression (e.g. 'cell')
feat_type	feature type of aggregated expression (e.g. 'rna', 'protein')
reduction	reduction on columns (e.g. cells) or rows (e.g. features)
provenance	origin data of aggregated expression information (if applicable)
misc	misc
my_rownames	(optional) if needed, set coordinates rowname values here
reduction_method	method used to generate dimension reduction

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.