createGiottoInstructions: Create instructions for giotto functions

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

Create instructions for giotto functions

Description

Function to set global instructions for giotto functions

Usage

createGiottoInstructions(
  python_path = NULL,
  show_plot = NULL,
  return_plot = NULL,
  save_plot = NULL,
  save_dir = NULL,
  plot_format = NULL,
  dpi = NULL,
  units = NULL,
  height = NULL,
  width = NULL,
  is_docker = FALSE,
  plot_count = 0,
  fiji_path = NULL
)

Arguments

python_path	path to python binary to use
show_plot	print plot to console, default = TRUE
return_plot	return plot as object, default = TRUE
save_plot	automatically save plot, dafault = FALSE
save_dir	path to directory where to save plots
plot_format	format of plots (defaults to png)
dpi	resolution for raster images
units	units of format (defaults to in)
height	height of plots
width	width of plots
is_docker	using docker implementation of Giotto (defaults to FALSE)
plot_count	[global option] start count for creating automatic unique plots
fiji_path	path to fiji executable

Value

named vector with giotto instructions

See Also

More online information can be found here https://rubd.github.io/Giotto_site/articles/instructions_and_plotting.html

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.