createMetafeats | R Documentation |
This function creates an average metafeat/metagene/module for clusters.
createMetafeats(
gobject,
spat_unit = NULL,
feat_type = NULL,
expression_values = c("normalized", "scaled", "custom"),
feat_clusters,
name = "metafeat",
return_gobject = TRUE
)
gobject |
Giotto object |
spat_unit |
spatial unit |
feat_type |
feature type |
expression_values |
expression values to use |
feat_clusters |
numerical vector with features as names |
name |
name of the metagene results |
return_gobject |
return giotto object |
An example for the 'gene_clusters' could be like this: cluster_vector = c(1, 1, 2, 2); names(cluster_vector) = c('geneA', 'geneB', 'geneC', 'geneD')
giotto object
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