createMetagenes: Create metagenes

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

Create metagenes

Description

This function creates an average metagene for gene clusters.

Usage

createMetagenes(
  gobject,
  spat_unit = NULL,
  expression_values = c("normalized", "scaled", "custom"),
  gene_clusters,
  name = "metagene",
  return_gobject = TRUE
)

Arguments

gobject	Giotto object
spat_unit	spatial unit
expression_values	expression values to use
gene_clusters	numerical vector with genes as names
name	name of the metagene results
return_gobject	return giotto object

Details

An example for the 'gene_clusters' could be like this: cluster_vector = c(1, 1, 2, 2); names(cluster_vector) = c('geneA', 'geneB', 'geneC', 'geneD')

Value

giotto object

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.