createSpatNetObj: Create S4 spatialNetworkObj
In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

createSpatNetObj

R Documentation

Create S4 spatialNetworkObj

Description

Create S4 spatialNetworkObj

Usage

createSpatNetObj(
  network,
  name = "test",
  networkDT_before_filter = NULL,
  method = NULL,
  spat_unit = "cell",
  provenance = NULL,
  parameters = NULL,
  outputObj = NULL,
  cellShapeObj = NULL,
  crossSectionObjects = NULL,
  misc = NULL
)

Arguments

`network`	network data with connections, distances, and weightings
`name`	name of spatialNetworkObj
`networkDT_before_filter`	(optional) unfiltered data.table of network connections, distances, and weightings
`method`	method used to generate spatial network
`spat_unit`	spatial unit tag
`provenance`	(optional) origin of aggregated information (if applicable)
`parameters`	(optional) additional method-specific parameters used during spatial network generation
`outputObj`	(optional) network geometry object
`cellShapeObj`	(optional) network cell shape information
`crossSectionObjects`	(optional) crossSectionObjects (see `create_crossSection_object`)
`misc`	misc