createSpatialFeaturesKNNnetwork_dbscan: Create kNN spatial feature network using dbscan

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

Create kNN spatial feature network using dbscan

Description

to create a feature kNN spatial network using dbscan

Usage

createSpatialFeaturesKNNnetwork_dbscan(
  gobject,
  feat_type = NULL,
  name = "knn_feats_network",
  k = 4,
  maximum_distance = NULL,
  minimum_k = 0,
  add_feat_ids = FALSE,
  verbose = TRUE,
  ...
)

Arguments

gobject	giotto object
feat_type	feature type
name	name to assign generated feature network
k	number of neighbors for kNN to find
maximum_distance	network maximum distance allowed
minimum_k	minimum neighbors allowed
add_feat_ids	whether to add feature information [boolean]
verbose	be verbose
...	additional parameters to pass to kNN

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.