create_average_DT: create_average_DT

View source: R/auxiliary_giotto.R

create_average_DTR Documentation

create_average_DT

Description

calculates average gene expression for a cell metadata factor (e.g. cluster)

Usage

create_average_DT(
  gobject,
  spat_unit = NULL,
  feat_type = NULL,
  meta_data_name,
  expression_values = c("normalized", "scaled", "custom")
)

Arguments

gobject

giotto object

spat_unit

spatial unit

feat_type

feature type

meta_data_name

name of metadata column to use

expression_values

which expression values to use

Value

data.table with average gene epression values for each factor


drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.