create_average_detection_DT: create_average_detection_DT

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

create_average_detection_DT

Description

calculates average gene detection for a cell metadata factor (e.g. cluster)

Usage

create_average_detection_DT(
  gobject,
  feat_type = NULL,
  spat_unit = NULL,
  meta_data_name,
  expression_values = c("normalized", "scaled", "custom"),
  detection_threshold = 0
)

Arguments

gobject	giotto object
feat_type	feature type
spat_unit	spatial unit
meta_data_name	name of metadata column to use
expression_values	which expression values to use
detection_threshold	detection threshold to consider a gene detected

Value

data.table with average gene epression values for each factor

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.