create_spat_enr_obj: Create S4 spatEnrObj

create_spat_enr_objR Documentation

Create S4 spatEnrObj

Description

Create S4 spatEnrObj

Usage

createSpatEnrObj(
  enrichment_data,
  name = "test",
  spat_unit = "cell",
  feat_type = "rna",
  method = NULL,
  provenance = NULL,
  misc = NULL,
  verbose = TRUE
)

Arguments

enrichment_data

spatial enrichment results, provided a dataframe-like object

name

name of S4 spatEnrObj

spat_unit

spatial unit of aggregated expression (e.g. 'cell')

feat_type

feature type of aggregated expression (e.g. 'rna', 'protein')

method

method used to generate spatial enrichment information

provenance

origin data of aggregated expression information (if applicable)

misc

misc additional information about the spatial enrichment or how it was generated


drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.