crossSectionPlot: crossSectionPlot

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

crossSectionPlot

Description

Visualize cells in a virtual cross section according to spatial coordinates

Usage

crossSectionPlot(
  gobject,
  spat_loc_name = "raw",
  feat_type = NULL,
  crossSection_obj = NULL,
  name = NULL,
  spatial_network_name = "Delaunay_network",
  default_save_name = "crossSectionPlot",
  ...
)

Arguments

gobject	giotto object
spat_loc_name	name of spatial locations
feat_type	feature type
crossSection_obj	cross section object as alternative input. default = NULL.
name	name of virtual cross section to use
spatial_network_name	name of spatial network to use
default_save_name	default save name for saving, don't change, change save_name in save_param
...	parameters for spatPlot2D

Details

Description of parameters.

Value

ggplot

See Also

crossSectionPlot

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.