filterCellProximityGenes: filterCellProximityGenes

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

filterCellProximityGenes

Description

Filter Interaction Changed Feature scores.

Usage

filterCellProximityGenes(...)

Arguments

...

Arguments passed on to filterInteractionChangedFeats icfObject ICF (interaction changed feature) score object min_cells minimum number of source cell type min_cells_expr minimum expression level for source cell type min_int_cells minimum number of interacting neighbor cell type min_int_cells_expr minimum expression level for interacting neighbor cell type min_fdr minimum adjusted p-value min_spat_diff minimum absolute spatial expression difference min_log2_fc minimum log2 fold-change min_zscore minimum z-score change zscores_column calculate z-scores over cell types or genes direction differential expression directions to keep

See Also

filterInteractionChangedFeats

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.