gefToGiotto: Convert gef to Giotto
In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox
View source: R/interoperability.R
gefToGiotto R Documentation
Convert gef to Giotto
Description
Converts .gef file (output stereo-seq pipeline) into
giotto subcellular object
Usage
gefToGiotto(gef_file, bin_size = "bin100", verbose = FALSE)
Arguments
gef_file
path to .gef file
bin_size
bin size to select from .gef file
verbose
be verbose
Details
Function in beta. Converts .gef object to Giotto object.
There are six possible choices for bin_size: bin1, bin10, bin20, bin50, bin100, bin200.
See SAW pipeline for additional information about the gef file.
drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.
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View source: R/interoperability.R
| gefToGiotto | R Documentation |
Convert gef to Giotto
Description
Converts .gef file (output stereo-seq pipeline) into giotto subcellular object
Usage
gefToGiotto(gef_file, bin_size = "bin100", verbose = FALSE)
Arguments
gef_file |
path to .gef file |
bin_size |
bin size to select from .gef file |
verbose |
be verbose |
Details
Function in beta. Converts .gef object to Giotto object.
There are six possible choices for bin_size: bin1, bin10, bin20, bin50, bin100, bin200.
See SAW pipeline for additional information about the gef file.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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