gefToGiotto: Convert gef to Giotto

View source: R/interoperability.R

gefToGiottoR Documentation

Convert gef to Giotto

Description

Converts .gef file (output stereo-seq pipeline) into giotto subcellular object

Usage

gefToGiotto(gef_file, bin_size = "bin100", verbose = FALSE)

Arguments

gef_file

path to .gef file

bin_size

bin size to select from .gef file

verbose

be verbose

Details

Function in beta. Converts .gef object to Giotto object.

There are six possible choices for bin_size: bin1, bin10, bin20, bin50, bin100, bin200.

See SAW pipeline for additional information about the gef file.


drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.