get10Xmatrix_h5 | R Documentation |
This function creates an expression matrix from a 10X h5 file path
get10Xmatrix_h5(
path_to_data,
gene_ids = c("symbols", "ensembl"),
remove_zero_rows = TRUE,
split_by_type = TRUE
)
path_to_data |
path to the 10X .h5 file |
gene_ids |
use gene symbols (default) or ensembl ids for the gene expression matrix |
remove_zero_rows |
removes rows with sum equal to zero |
split_by_type |
split into multiple matrices based on 3rd column of features.tsv(.gz) |
If the .h5 10x file has multiple classes of features (e.g. expression vs QC
probes) or modalities (e.g. RNA and protein), and split_by_type
param is TRUE
,
multiple matrices will be returned
(list of) sparse expression matrix from 10X
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.