getClusterSimilarity: getClusterSimilarity

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

getClusterSimilarity

Description

Creates data.table with pairwise correlation scores between each cluster.

Usage

getClusterSimilarity(
  gobject,
  spat_unit = NULL,
  feat_type = NULL,
  expression_values = c("normalized", "scaled", "custom"),
  cluster_column,
  cor = c("pearson", "spearman")
)

Arguments

gobject	giotto object
spat_unit	spatial unit
feat_type	feature type
expression_values	expression values to use
cluster_column	name of column to use for clusters
cor	correlation score to calculate distance

Details

Creates data.table with pairwise correlation scores between each cluster and the group size (# of cells) for each cluster. This information can be used together with mergeClusters to combine very similar or small clusters into bigger clusters.

Value

data.table

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.