getPolygonInfo: Get polygon info

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

Get polygon info

Description

Get giotto polygon spatVector

Usage

getPolygonInfo(
  gobject = NULL,
  polygon_name = NULL,
  polygon_overlap = NULL,
  return_giottoPolygon = FALSE
)

Arguments

gobject	giotto object
polygon_name	name of polygons. Default is "cell"
polygon_overlap	include polygon overlap information
return_giottoPolygon	(Defaults to FALSE) Return as giottoPolygon S4 object

See Also

Other polygon info data accessor functions: get_polygon_info(), setPolygonInfo(), set_polygon_info()

Other functions to get data from giotto object: getDimReduction(), getExpression(), getFeatureInfo(), getGiottoImage(), getMultiomics(), getNearestNetwork(), getSpatialEnrichment(), getSpatialGrid(), getSpatialLocations(), getSpatialNetwork(), get_NearestNetwork(), get_dimReduction(), get_feature_info(), get_giottoImage(), get_multiomics(), get_polygon_info(), get_spatialGrid(), get_spatialNetwork(), get_spatial_enrichment(), get_spatial_locations()

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.