getSpatialGrid: Get spatial grid

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

Get spatial grid

Description

Function to get spatial grid

Usage

getSpatialGrid(
  gobject,
  spat_unit = NULL,
  feat_type = NULL,
  name = NULL,
  return_grid_Obj = FALSE,
  set_defaults = TRUE
)

Arguments

gobject	giotto object
spat_unit	spatial unit (e.g. "cell")
feat_type	feature type (e.g. "rna", "dna", "protein")
name	name of spatial grid
return_grid_Obj	return grid object (default = FALSE)
set_defaults	set default spat_unit and feat_type. Change to FALSE only when expression and spat_info are not expected to exist.

See Also

Other spatial grid data accessor functions: get_spatialGrid(), setSpatialGrid(), set_spatialGrid()

Other functions to get data from giotto object: getDimReduction(), getExpression(), getFeatureInfo(), getGiottoImage(), getMultiomics(), getNearestNetwork(), getPolygonInfo(), getSpatialEnrichment(), getSpatialLocations(), getSpatialNetwork(), get_NearestNetwork(), get_dimReduction(), get_feature_info(), get_giottoImage(), get_multiomics(), get_polygon_info(), get_spatialGrid(), get_spatialNetwork(), get_spatial_enrichment(), get_spatial_locations()

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.