get_feat_id: Get feat IDs for a given feature type

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

Get feat IDs for a given feature type

Description

Across a single modality/feature type, all feature information is expected to share a single set of feat_IDs. These feat_IDs are stored within the giotto object's feat_ID slot. Getters and setters for this slot directly (get) or replace (set) this slot.

Usage

get_feat_id(gobject, feat_type = NULL, set_defaults = TRUE)

Arguments

gobject	giotto object
feat_type	feature type (e.g. "rna", "dna", "protein")
set_defaults	set default spat_unit and feat_type. Change to FALSE only when expression and spat_info are not expected to exist.

See Also

set_feat_id

Other functions to set data in giotto object: get_cell_id(), setCellMetadata(), setDimReduction(), setExpression(), setFeatureInfo(), setFeatureMetadata(), setGiottoImage(), setMultiomics(), setNearestNetwork(), setPolygonInfo(), setSpatialEnrichment(), setSpatialGrid(), setSpatialLocations(), setSpatialNetwork(), set_NearestNetwork(), set_cell_id(), set_cell_metadata(), set_dimReduction(), set_expression_values(), set_feat_id(), set_feature_info(), set_giottoImage(), set_multiomics(), set_polygon_info(), set_spatialGrid(), set_spatialNetwork(), set_spatial_enrichment(), set_spatial_locations()

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.