get_multiomics: Get multiomics integration results

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

Get multiomics integration results

Description

Get a multiomics integration result from a Giotto object

Usage

get_multiomics(
  gobject,
  spat_unit = NULL,
  feat_type = NULL,
  integration_method = "WNN",
  result_name = "theta_weighted_matrix"
)

Arguments

gobject	A Giotto object
spat_unit	spatial unit (e.g. 'cell')
feat_type	integrated feature type (e.g. 'rna_protein')
integration_method	multiomics integration method used. Default = 'WNN'
result_name	Default = 'theta_weighted_matrix'

Value

A multiomics integration result (e.g. theta_weighted_matrix from WNN)

See Also

Other multiomics accessor functions: getMultiomics(), setMultiomics(), set_multiomics()

Other functions to get data from giotto object: getDimReduction(), getExpression(), getFeatureInfo(), getGiottoImage(), getMultiomics(), getNearestNetwork(), getPolygonInfo(), getSpatialEnrichment(), getSpatialGrid(), getSpatialLocations(), getSpatialNetwork(), get_NearestNetwork(), get_dimReduction(), get_feature_info(), get_giottoImage(), get_polygon_info(), get_spatialGrid(), get_spatialNetwork(), get_spatial_enrichment(), get_spatial_locations()

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.