giottoImage-class: S4 giottoImage Class

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

S4 giottoImage Class

Description

Framework of giotto object to store and work with spatial expression data

Details

[mg_object] Core object is any image that can be read by the magick package

[boundaries] Boundary adjustments can be used to manually or automatically through a script adjust the image with the spatial data.

Slots

name

name of Giotto image

mg_object

magick image object

minmax

minimum and maximum of associated spatial location coordinates

boundaries

x and y coordinate adjustments (default to 0)

scale_factor

image scaling relative to spatial locations

resolution

spatial location units covered per pixel

file_path

file path to the image if given

OS_platform

Operating System to run Giotto analysis on

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.