giottoLargeImage-class: S4 giottoLargeImage Class

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

S4 giottoLargeImage Class

Description

class to handle images too large to load in normally through magick

Slots

name

name of large Giotto image

raster_object

terra raster object

extent

tracks the extent of the raster object. Note that most processes should rely on the extent of the raster object instead of this.

overall_extent

terra extent object covering the original extent of image

scale_factor

image scaling relative to spatial locations

resolution

spatial location units covered per pixel

max_intensity

value to set as maximum intensity in color scaling

min_intensity

minimum value found

is_int

values are integers

file_path

file path to the image if given

OS_platform

Operating System to run Giotto analysis on

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.