giottoToSeurat: Convert Giotto to Seurat
In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox
giottoToSeurat R Documentation
Convert Giotto to Seurat
Description
Converts Giotto object into a Seurat object. This functions extracts
specific sets of data belonging to specified spatial unit.
The default values are 'cell' and 'rna' respectively.
Usage
giottoToSeurat(gobject, spat_unit = NULL, obj_use = NULL, ...)
Arguments
gobject
Giotto object
spat_unit
spatial unit (e.g. 'cell')
obj_use
Giotto object (deprecated, use gobject)
...
additional params to pass to get_spatial_locations
Value
Seurat object
drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.
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| giottoToSeurat | R Documentation |
Convert Giotto to Seurat
Description
Converts Giotto object into a Seurat object. This functions extracts specific sets of data belonging to specified spatial unit. The default values are 'cell' and 'rna' respectively.
Usage
giottoToSeurat(gobject, spat_unit = NULL, obj_use = NULL, ...)
Arguments
gobject |
Giotto object |
spat_unit |
spatial unit (e.g. 'cell') |
obj_use |
Giotto object (deprecated, use gobject) |
... |
additional params to pass to |
Value
Seurat object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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