heatmSpatialCorGenes: heatmSpatialCorGenes

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

heatmSpatialCorGenes

Description

Create heatmap of spatially correlated genes

Usage

heatmSpatialCorGenes(...)

Arguments

...

Arguments passed on to heatmSpatialCorFeats gobject giotto object spatCorObject spatial correlation object use_clus_name name of clusters to visualize (from clusterSpatialCorFeats()) show_cluster_annot show cluster annotation on top of heatmap show_row_dend show row dendrogram show_column_dend show column dendrogram show_row_names show row names show_column_names show column names show_plot show plot return_plot return ggplot object save_plot directly save the plot [boolean] save_param list of saving parameters, see showSaveParameters default_save_name default save name for saving, don't change, change save_name in save_param

See Also

heatmSpatialCorFeats

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.