list_nearest_networks: list_nearest_networks

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

list_nearest_networks

Description

return the available nearest neighbor network information

Usage

list_nearest_networks(
  gobject,
  spat_unit = NULL,
  feat_type = NULL,
  nn_type = NULL,
  return_uniques = FALSE
)

Arguments

gobject	giotto object
spat_unit	spatial unit (e.g. "cell")
feat_type	feature type (e.g. "rna", "dna", "protein")
nn_type	nearest neighbor method (e.g. "sNN", "kNN")
return_uniques	return unique nesting names (ignores if final object exists/is correct class)

Value

names and locations of nearest neighbor networks as a data.table

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.