loadGiotto: loadGiotto

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

loadGiotto

Description

Saves a Giotto object to a specific folder structure

Usage

loadGiotto(
  path_to_folder,
  load_params = list(),
  reconnect_giottoImage = TRUE,
  python_path = NULL,
  verbose = TRUE
)

Arguments

path_to_folder	path to folder where Giotto object was stored with saveGiotto
load_params	additional parameters for loading or reading giotto object
reconnect_giottoImage	(default = TRUE) whether to attempt reconnection of magick based image objects
python_path	(optional) manually set your python path
verbose	be verbose

Details

Works together with saveGiotto to save and re-load Giotto objects. Additional load_params need to be provided as a list and will go to readRDS or qread You can set the python path, alternatively it will look for an existing Giotto python environment.

Value

Giotto object

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.