load_cosmx_folder_subcellular: Load CosMx folder subcellular info

load_cosmx_folder_subcellularR Documentation

Load CosMx folder subcellular info

Description

loads in the feature detections information. Note that the mask images are still required for a working subcellular object, and those are loaded in createGiottoCosMxObject_subcellular

Usage

load_cosmx_folder_subcellular(dir_items, FOVs = NULL, cores, verbose = TRUE)

Arguments

FOVs

field of views to load (only affects subcellular data and images)

cores

how many cores or threads to use to read data if paths are provided

verbose

be verbose when building Giotto object


drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.