load_cosmx_folder_subcellular: Load CosMx folder subcellular info
In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox
load_cosmx_folder_subcellular R Documentation
Load CosMx folder subcellular info
Description
loads in the feature detections information. Note that the mask
images are still required for a working subcellular object, and those are loaded
in createGiottoCosMxObject_subcellular
Usage
load_cosmx_folder_subcellular(dir_items, FOVs = NULL, cores, verbose = TRUE)
Arguments
FOVs
field of views to load (only affects subcellular data and images)
cores
how many cores or threads to use to read data if paths are provided
verbose
be verbose when building Giotto object
drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.
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| load_cosmx_folder_subcellular | R Documentation |
Load CosMx folder subcellular info
Description
loads in the feature detections information. Note that the mask
images are still required for a working subcellular object, and those are loaded
in createGiottoCosMxObject_subcellular
Usage
load_cosmx_folder_subcellular(dir_items, FOVs = NULL, cores, verbose = TRUE)
Arguments
FOVs |
field of views to load (only affects subcellular data and images) |
cores |
how many cores or threads to use to read data if paths are provided |
verbose |
be verbose when building Giotto object |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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