load_merscope_folder: Load MERSCOPE data from folder

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

Load MERSCOPE data from folder

Description

Load MERSCOPE data from folder

Usage

load_merscope_folder(
  dir_items,
  data_to_use,
  fovs = NULL,
  poly_z_indices = 1L:7L,
  cores = NA,
  verbose = TRUE
)

load_merscope_folder_subcellular(
  dir_items,
  data_to_use,
  cores = NA,
  poly_z_indices = 1L:7L,
  verbose = TRUE,
  fovs = NULL
)

load_merscope_folder_aggregate(
  dir_items,
  data_to_use,
  cores = NA,
  verbose = TRUE
)

Arguments

dir_items	list of full filepaths from read_merscope_folder
data_to_use	which of either the 'subcellular' or 'aggregate' information to use for object creation
cores	how many cores or threads to use to read data if paths are provided
verbose	be verbose when building Giotto object

Value

list of loaded-in MERSCOPE data

Functions

• load_merscope_folder_subcellular(): Load items for 'subcellular' workflow

• load_merscope_folder_aggregate(): Load items for 'aggregate' workflow

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.